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Neuroimaging

MOOC on neuroimaging

  • description: MOOC on neuroimaging
  • URL: part 1 and part 2
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  • tags: [video] [fMRI] [MOOC]
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  • level: [intermediate] [meta-analysis]
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  • by:Tor Wager and Martin Lindquist

Quality control

Neuroimaging quality control task force

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  • URL: URL
  • date: 2018
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  • level: [intermediate]
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quality control on MRI and fMRI

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  • URL: URL
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COBIDacq

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  • URL: URL
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wikibook neuroimaging data processing

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  • URL: URL
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References for quality control

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  • URL: URL
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MRIQC

  • description: MRI quality control. A BIDS app that runs a pipeline to assess the quality of your data.
  • URL: URL
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the PCP Quality Assessment Protocol

  • description: BIDS app based on the protocol of the connectome project data
  • URL: URL1 , URL2
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Scripts for quality control of diffusion data

Scripts

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  • URL: URL
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  • tags: [software]
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Qoala-t

  • description: QA for freesurfer segmentations
  • URL: URL
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  • shinyapp
  • description: QA for freesurfer segmentations
  • URL: URL
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Visual QC

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  • URL: URL
  • date: 2018
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  • level: [intermediate]
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  • by:Pradeep

Diffusion Microstructure Imaging in Python (Dmipy)

  • description: The Dmipy software project is dedicated to fasciliting high-level, reproducible diffusion microstructure research. The Dmipy open-source repository has many examples on implementing and fitting microstructure models.
  • URL: URL
  • date: 2018
  • tags: [software] [image processing]
  • duration:
  • level: [intermediate]
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  • reference: reference
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Other specific topics

Computer Vision

  • description: Lecture on Computer Vision by Michael Beyeler within Neurohackademy 2018.
  • URL: URL
  • date: 2018
  • tags: [video] [summer school] [image processing] [machine learning]
  • duration: 00:53
  • level: [intermediate]
  • event: Neurohackademy 2018
  • by: Michael Beyeler

Finding low-dimensional structure in large-scale neural recordings

  • description:
  • URL: URL
  • date: 2018
  • tags: [video] [summer school]
  • duration: 00:36
  • level: [intermediate]
  • event: Neurohackademy 2018
  • reference:
  • by: Eva Dyer

Interactive Data Visualization with D3

  • description:
  • URL: URL
  • date: 2018
  • tags: [video] [summer school]
  • duration: 00:49
  • level: [intermediate]
  • event: Neurohackweek 2017
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  • by: Anisha Keshavan

Neuroethics

  • description:
  • URL: https://neurohackademy.org/course/neuroethics/
  • date: 2018
  • tags: [video] [summer school]
  • duration: 00:58
  • level: [intermediate]
  • event: Neurohackademy 2018
  • reference:
  • by: Eran Klein

Quantitative and diffusion MRI modeling of developmental data

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  • URL: URL
  • date: 2018
  • tags: [video] [summer school]
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  • level: [intermediate]
  • event: Neurohackademy
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  • by: by Yason Yeatman

Meta analysis

Overview_of_Meta-Analysis_Approaches

video

  • description: Overview of Meta Analysis Approaches
  • URL: URL
  • date: 2018
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  • duration: 00:18
  • level: [intermediate]
  • event: OHBM 2018
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  • by: Tom Nichols

slides

  • description: Overview of Meta Analysis Approaches
  • URL: URL
  • date: 2018
  • tags: [slides]
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  • level: [intermediate]
  • event: OHBM 2018
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ALE and BrainMap

  • description: Overview of Meta Analysis Approaches
  • URL: URL
  • date: 2018
  • tags: [video]
  • duration: 00:22
  • level: [intermediate]
  • event: OHBM 2018
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  • by: Simon B. Eickhoff

NiMARE

  • description: NiMARE is a Python library for coordinate- and image-based meta-analysis.
  • URL: URL
  • type: [software] [python] [meta-analysis]
  • level: [intermediate]
  • tutorial
  • URL: URL
  • type: [tutorial] [juptyer] [meta-analysis]
  • level: [intermediate]
  • by: Chris Gorgolewski

coordinate based meta-analysis

brainmap

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  • URL: URL
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  • level: [intermediate] [meta-analysis]
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Sleuth

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  • URL: URL
  • date: 2018
  • tags: [software] [meta-analysis]
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  • level: [intermediate]
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GingerALE

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  • URL: URL
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  • tags: [software] [meta-analysis]
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  • level: [intermediate]
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image based meta-analysis

IBMA

  • description: IBMA is the Image-Based Meta-Analysis toolbox for SPM.
  • URL: URL
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  • tags: [software] [meta-analysis]
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  • level: [intermediate]
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