Programming

Introduction & Basics

• Khan Academy: Beginners' coursework on programming, algorithms, and more.

General

• The Missing Semester of Your CS Education: 11 videos ranging from 45min-1h25 about debugging, data wrangling, and useful tools. By @anishathalye, @jjgo and @jonhoo from MIT.

Shell programming

• Conquering the command line

• Learn shell

• The shell introduction I wish I had by Max Antonucci

• The Unix shell

• Andrew Jahn's Unix introduction

• Bash cheatsheet

• Explain shell commands

• Check shell scripts

• Vim interactive tutorial

Python

Introduction

• A whirlwind tour of Python by Jake Vanderplas 2016 (full text of his free O'Reilly book; link to GitHub with Jupyter Notebooks, Python3)

• Introduction to Python by Chris Gorgolewski within Brainhack Americas 2015 (45 min, Python2, screen shared live coding in Ipython Notebook)

• Introduction to Python by Tal Yarkoni within Neurohackademy 2019 (1 hr 42 min, lecture with code slides and live coding)

• Python programming by Valentina Staneva within Neurohackweek 2016 (course material & code shared)

• Python tips and tricks by Tal Yarkoni within Neurohackweek 2016 (58 min, lecture with code slides and live coding)

• Scientific computing with Python by Luke Chang within MIND 2018 (24 min, lecture)

• An introduction to Python! is course made by Thomas Donoghue

• Programming with Python Software Carpentry practical lesson (~7h25min) by Bekolay, T., Staneva, V., Fouilloux, A., Belkin, M., & Ko, L. � GitHub repo

Specific topics

• Cython and numba by Ariel Rokem within Neurohackweek 2016

• Data manipulation in Python/Pandas by Tal Yarkoni within Neurohackademy 2018 (1 hr 21 min)

• High-performance Python by Ariel Rokem within Neurohackweek 2016

• Modular Software Design by Jeremy Freeman within Neurohackweek 2016 (48 min)

• Python packaging by Ariel Rokem within Neurohackademy 2018 (1 hr 26 min)

• Python Data Science Handbook by Jake Vanderplas

• Science Hacking 101 by Jeremy Manning within MIND 2018

• Software testing 1 by Chris Gorgolewski within Neurohackweek

• Software testing 2 by Chris Gorgolewski within Neurohackweek

• Testing scientific code by Chris Gorgolewski within Neurohackweek 2017 (43 min)

• Porting Python 2 code to Python 3 - official

• guide 2 - another migration guide

• guide 3 - migration strategies

• guide 4 - practicalities and packaging

R

• Programming with R by Jeanette Mumford within Neurohackweek 2016

• Introduction to Neurohacking in R MOOC on coursera

• Programming with R Software Carpentry practical lesson (~6h40min) by Leinweber, K., Das, D., & Goswami, R. GitHub repo

• R for Reproducible Scientific Analysis Software Carpentry lesson (~12h20min) by Wright, T., Zimmerman, N., Oliver, J., & Mawdsley, D. GitHub repo