Neuroimaging resources

Neuroimaging video series

Either on youtube or on some other platform

Neurohackademy Lectures

Lecture series on neuroimaging and electrophysiology from the Neurohackademy summer school.

Mike Cohen's Lectures on Time Series Analysis

Mike Cohen's lecturelets on time series data analysis here.

Mumford brainstats

Jeanette Mumford series of videos on neuroimaging analysis on youtube. The channel also has Facebook group.

Andrew Jahn

Here for the videos with 'tutorials' for FSL, SPM, Freesurfer and AFNI amongst other things.

Exploring the Human Connectome 2019

HCP 2019 course lecture slides can be found here

Center for Brains, Minds and Machines

Here

Organization from human brain mapping (OHBM)

The videos of the lectures and workshops from the previous HBM conferences are available online here.

fMRIf summer courses from the NIH

Here

Conference on Cognitive Computational Neuroscience (CCN)

This conference has the videos from its first edition here

INCF

Here

TVB made easy

Lectures showing how to use The Virtual Brain software in a clinical context can be found here

Computational and Systems Neuroscience (Cosyne) 2018

Here

Cambridge University MRC Cognition and Brain Sciences Unit Method Seminars 2017

Here

Cambridge University MRC Cognition and Brain Sciences Unit Method Seminars 2018

Here

ISMRM Educational Materials

Here

fMRIF NIMH fMRI Course - from 2014 to 2018

Here

Rad229: MRI Signals and Sequences – Stanford University 2020 course

Here

The above list is by far not exhaustive, you will be able to find more resources in the following:

• the Neuroimaging Informatics Tools and Resources Clearinghouse
• Mariam Aly's lab wiki
• Jonathan Peelle's list of resources for beignners
• Stephan Heunis has a list to many SPM and matlab material.
• https://github.com/brainhack101 also has a collections or links to courses, data...
• a list of Scientific Coding Resource put together by neuroconscience.
• Aya Ben-Yakov compiled a great list of open-science resources for the CBU in Cambridge.
• LabHacks is a list of resources for data driven neuroscientists put together by Patrick Beukema
• a list of open computational neuroscience resources put together by Austin Soplata
• a list of Computational resources put together by Martina Vilas

Interactive Brain Atlases

• 15 pcw - Whole Brain Atlas

• 21 pcw - Cerebrum

• 21 pcw - Brain Stem

• 34 years old - Whole Brain

• Brainnetome Atlas

• Anatomy Explorer

Analysis

• Advanced time-series analysis (Dynamic Mode Decomposition) by Bing Brunton within Neurohackweek 2017 (1 hr 1 min)
• Advanced time-series analysis by Bing Brunton within Neurohackweek 2016 (1 hr 8 min)
• Data visualization by Tal Yarkoni within Neurohackademy 2018
• Efficiency and Design Optimization for fMRI by Jeanette Mumford within Neurohackweek 2017 (51 min)
• Image processing by Ariel Rokem within Neurohackweek 2016
• Modeling fMRI data by Kendrick Kay within Neurohackweek 2016 (1 hr 2 min)
• NiBabel 101 by Dan Lurie within Brainhack Americas (18 min)
• Numerical computing for neuroimaging by JB Poline within Neurohackademy 2018
• R for statistical analysis of fMRI data by Tara Madhyastha within Neurohackademy 2018 (1 hr 26 min)
• A video series on dynamic causal modeling by Kevin Aquino [6 hrs]
• A blog post tutorial on active inference (to get a better grasp on what free energy is)

Brainhack

• Brainhacking by Cameron Craddock within Neurohackademy 2018 (59 min)
• Craddock, R. C., Margulies, D. S., Bellec, P., Nichols, B. N., Alcauter, S., Barrios, F. A., … Xu, T. (2016). Brainhack: a collaborative workshop for the open neuroscience community. GigaScience, 5(1).
• Introduction to Brainhack by Cameron Craddock within Brainhack Proceedings 2017 (30 min)
• Introduction to Neurohackweek 2017 by Ariel Rokem within Neurohackweek 2017